- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- monomer
- Ligands
- 1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 9 residues within 4Å:- Chain A: G.22, H.23, T.152, A.153, W.389, N.390
- Ligands: UDP.1, DHR.8, EDO.10
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.152
- Water bridges: A:G.22, A:H.23, A:H.23, A:E.410
EDO.3: 9 residues within 4Å:- Chain A: P.19, G.20, Q.21, Y.48, N.49, R.52, L.53, Q.87, I.285
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.49, A:R.52, A:R.52
- Water bridges: A:Q.87
EDO.4: 6 residues within 4Å:- Chain A: N.88, A.313, V.314, C.407, H.408, R.430
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.314, A:R.430
- Water bridges: A:N.88
EDO.5: 8 residues within 4Å:- Chain A: L.296, D.297, K.299, P.300, A.301, H.377, A.378, A.379
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.296
EDO.6: 5 residues within 4Å:- Chain A: L.102, R.106, A.138, A.139, E.142
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.106, A:E.142
EDO.7: 9 residues within 4Å:- Chain A: E.242, L.243, E.244, K.245, D.246, V.247, V.421, W.422, W.460
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.242, A:K.245, A:D.246, A:D.246
- Water bridges: A:V.247
EDO.9: 9 residues within 4Å:- Chain A: V.131, V.132, F.151, Y.161, M.218, T.222, Q.225, M.226
- Ligands: DHR.8
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.222, A:Q.225
EDO.10: 12 residues within 4Å:- Chain A: G.22, H.23, M.312, A.313, H.386, G.388, H.408, E.410, Q.411
- Ligands: UDP.1, EDO.2, DHR.8
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.411
- Water bridges: A:S.311, A:M.312, A:E.410
EDO.11: 7 residues within 4Å:- Chain A: R.141, I.145, P.146, E.147, G.231, S.232, K.233
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.141, A:E.147, A:G.231
- Water bridges: A:G.144
- 1 x DHR: (2S)-HYDROXY(4-HYDROXYPHENYL)ETHANENITRILE(Non-covalent)
DHR.8: 15 residues within 4Å:- Chain A: F.18, H.23, V.90, V.94, V.132, Y.161, F.208, M.218, Q.225, M.312, H.408, G.409
- Ligands: EDO.2, EDO.9, EDO.10
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:V.90, A:V.94, A:V.132, A:F.208
- Hydrogen bonds: A:H.23, A:Q.225
- pi-Stacking: A:F.18
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Del Giudice, R. et al., Structure-guided engineering of key amino acids in UGT85B1 controlling substrate and stereo-specificity in aromatic cyanogenic glucoside biosynthesis. Plant J. (2022)
- Release Date
- 2022-07-13
- Peptides
- Cyanohydrin beta-glucosyltransferase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- monomer
- Ligands
- 1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x DHR: (2S)-HYDROXY(4-HYDROXYPHENYL)ETHANENITRILE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Del Giudice, R. et al., Structure-guided engineering of key amino acids in UGT85B1 controlling substrate and stereo-specificity in aromatic cyanogenic glucoside biosynthesis. Plant J. (2022)
- Release Date
- 2022-07-13
- Peptides
- Cyanohydrin beta-glucosyltransferase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A