SMTL ID : 7zf9.2 (1 other biounit)

SARS-CoV-2 Omicron BA.2 RBD in complex with COVOX-150 Fab (P21)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain C: D.13, F.16, N.17, F.45 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:F.16, C:F.45 Hydrogen bonds: C:N.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nutalai, R. et al., Potent cross-reactive antibodies following Omicron breakthrough in vaccinees. Cell (2022)

Release Date

2022-06-01

Peptides

COVOX-150 heavy chain: A
COVOX-150 light chain: B
Spike protein S1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

COVOX-150 heavy chain

COVOX-150 light chain

Spike protein S1

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