SMTL ID : 7zfb.1 (1 other biounit)

SARS-CoV-2 Omicron RBD in complex with nanobody C1, Omi-18 and Omi-31 Fabs

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.08 Å

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain B: F.16, N.17, F.48 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nutalai, R. et al., Potent cross-reactive antibodies following Omicron breakthrough in vaccinees. Cell (2022)

Release Date

2022-06-01

Peptides

Nanobody C1: A
Spike protein S1: B
Omi-31 heavy chain: C
Omi-31 light chain: D
Omi-18 heavy chain: E
Omi-18 light chain: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
E

C
A

D
B

E
H

F
L

Nanobody C1

Spike protein S1

Omi-31 heavy chain

Omi-31 light chain

Omi-18 heavy chain

Omi-18 light chain

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