SMTL ID : 7zff.1

Omi-42 Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

hetero-1-1-mer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: T.117, V.118, T.119, L.138, I.139, S.140 Chain B: H.176, F.178, T.195 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.117, A:T.119, B:T.195 GOL.2: 6 residues within 4Å: Chain A: A.82, E.85, Q.111, Y.143, N.173, K.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.85, A:Q.111, A:Q.111 GOL.3: 8 residues within 4Å: Chain A: Q.39, K.47, P.61, R.63, F.64, E.83, D.84 Ligands: GOL.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.39, A:K.47, A:K.47, A:R.63, A:E.83 GOL.4: 4 residues within 4Å: Chain A: T.184, E.186, Q.187, S.190 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.184, A:T.184, A:S.190, A:S.190 GOL.5: 7 residues within 4Å: Chain A: Q.39, Q.40, H.41, K.44, A.45, K.47 Ligands: GOL.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.39, A:H.41, A:K.44 GOL.6: 3 residues within 4Å: Chain A: T.117, D.141 Chain B: H.176 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.141, A:D.141 GOL.7: 6 residues within 4Å: Chain A: L.120, F.121 Chain B: A.137, P.138, S.139, A.149 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.137, B:S.139, B:A.149 GOL.8: 6 residues within 4Å: Chain B: E.160, P.161, V.162, F.178, P.179, L.190 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.160, B:V.162, B:F.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nutalai, R. et al., Potent cross-reactive antibodies following Omicron breakthrough in vaccinees. Cell (2022)

Release Date

2022-06-01

Peptides

Omi-42 light chain: A
Omi-42 Heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

Omi-42 light chain

Omi-42 Heavy chain

Related Entries With Identical Sequence