SMTL ID : 7zfm.1 (1 other biounit)

Engineered Protein Targeting the Zika Viral Envelope Fusion Loop

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: Q.138, T.139, R.140 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.138, A:R.140 EDO.2: 2 residues within 4Å: Chain A: H.136, Q.138 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.136 EDO.3: 3 residues within 4Å: Chain A: N.58, N.59 Ligands: EDO.6 No protein-ligand interaction detected (PLIP) EDO.4: 2 residues within 4Å: Chain A: I.71, P.72 No protein-ligand interaction detected (PLIP) EDO.5: 5 residues within 4Å: Chain A: I.71, Y.74, M.75, N.131 Ligands: P6G.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.131 EDO.6: 2 residues within 4Å: Chain A: N.58 Ligands: EDO.3 No protein-ligand interaction detected (PLIP) EDO.7: 3 residues within 4Å: Chain A: T.82, Q.86, K.88 No protein-ligand interaction detected (PLIP) EDO.8: 3 residues within 4Å: Chain A: F.143 Ligands: P6G.9, ACY.13 No protein-ligand interaction detected (PLIP) EDO.15: 1 residues within 4Å: Chain A: Q.89 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.89

1 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.9: 12 residues within 4Å: Chain A: I.71, M.75, Q.77, M.112, F.125, N.131, Y.133, A.134, F.143 Ligands: EDO.5, EDO.8, ACY.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.131

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.10: 4 residues within 4Å: Chain A: P.72, Q.161, V.162, P.163 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.161, A:Q.161, A:V.162

3 x ACY: ACETIC ACID(Non-functional Binders)

ACY.11: 7 residues within 4Å: Chain A: M.85, H.165, Y.170, V.173, P.174, S.175, P.177 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.177 Salt bridges: A:H.165 ACY.12: 5 residues within 4Å: Chain A: S.69, I.71, Q.171, S.172 Ligands: P6G.9 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.71 Hydrogen bonds: A:S.172 ACY.13: 5 residues within 4Å: Chain A: R.113, T.114, E.115, F.143 Ligands: EDO.8 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.143 Salt bridges: A:R.113

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.14: 3 residues within 4Å: Chain A: R.106, G.107, M.153 3 PLIP interactions: 3 interactions with chain A Water bridges: A:V.149 Salt bridges: A:R.106, A:R.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Viana, I.F.T. et al., In Vitro Neutralisation of Zika Virus by an Engineered Protein Targeting the Viral Envelope Fusion Loop. SSRN (2022)

Release Date

2022-08-17

Peptides

Peptidyl-prolyl cis-trans isomerase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase A

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