SMTL ID : 7zfr.1

Crystal structure of HLA-DP (DPA1*02:01-DPB1*01:01) in complex with a peptide bound in the reverse direction

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: V.121, N.123, E.171, H.172, W.173 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Racle, J. et al., Machine learning predictions of MHC-II specificities reveal alternative binding mode of class II epitopes. Immunity (2023)

Release Date

2023-04-12

Peptides

MHC class II HLA-DP alpha chain (DPA1*02:01): A
MHC class II HLA-DP beta chain (DPB1*01:01): B
Synthetic peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

MHC class II HLA-DP alpha chain (DPA1*02:01)

MHC class II HLA-DP beta chain (DPB1*01:01)

Synthetic peptide

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