SMTL ID : 7zg0.1

Murine IL-27 in complex with IL-27Ra and a non-competing Nb

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.18 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain E: Y.31, V.33, N.40, W.78, T.80 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain F: Y.31, N.40, S.77, W.78, T.80 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: N.88, S.90, L.91 Chain D: Q.86 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:Q.86, A:N.88 NAG.4: 4 residues within 4Å: Chain B: N.88, S.90, L.91 Chain C: V.112 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:V.112 Hydrogen bonds: B:N.88 NAG.5: 4 residues within 4Å: Chain C: I.75, N.117, T.119, L.130 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:L.130 Hydrogen bonds: C:N.117, C:T.119 NAG.6: 4 residues within 4Å: Chain D: N.117, T.119, S.128, L.130 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:L.130 Hydrogen bonds: D:T.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skladanowska, K. et al., Structural basis of activation and antagonism of receptor signaling mediated by interleukin-27. Cell Rep (2022)

Release Date

2022-11-02

Peptides

Interleukin-27 subunit alpha: AB
Interleukin-27 subunit beta: CD
Interleukin-27 receptor subunit alpha: EF
Nanobody 5: GH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Interleukin-27 subunit alpha

Interleukin-27 subunit beta

Interleukin-27 receptor subunit alpha

Nanobody 5