SMTL ID : 7zgc.1

Structure of yeast Sec14p with NPPM481

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

monomer

Ligands

1 x IUO: (4-chloranyl-3-nitro-phenyl)-[4-(2-fluorophenyl)piperazin-1-yl]methanone(Non-covalent)

IUO.1: 16 residues within 4Å: Chain A: Y.119, Y.130, E.132, Y.159, V.162, S.181, T.183, M.185, V.202, A.205, S.206, S.209, Y.213, R.216, M.217, F.220 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.202, A:A.205, A:Y.213, A:R.216 Hydrogen bonds: A:R.216 Water bridges: A:M.217 pi-Stacking: A:Y.159 Halogen bonds: A:Y.159

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: Y.119, H.120, K.121, L.285, S.288, D.289, I.290 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.121, A:S.288, A:I.290 Salt bridges: A:H.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X.R. et al., Mechanisms by which small molecules of diverse chemotypes arrest Sec14 lipid transfer activity. J.Biol.Chem. (2023)

Release Date

2023-01-25

Peptides

SEC14 cytosolic factor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SEC14 cytosolic factor

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