SMTL ID : 7zh5.1

SARS CoV Spike protein, Open conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

23 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: Q.19, Y.50, N.52 Ligand excluded by PLIP NAG.2: 3 residues within 4Å: Chain A: N.145 Chain B: A.326, I.442 Ligand excluded by PLIP NAG.3: 5 residues within 4Å: Chain A: S.92, N.214 Chain B: K.434, L.435, R.436 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain A: N.256 Chain B: R.531 Ligand excluded by PLIP NAG.5: 2 residues within 4Å: Chain A: N.678, I.1099 Ligand excluded by PLIP NAG.6: 4 residues within 4Å: Chain A: T.685, N.686, Q.895, Q.1040 Ligand excluded by PLIP NAG.7: 4 residues within 4Å: Chain A: Y.765, N.770, S.772, Q.773 Ligand excluded by PLIP NAG.8: 2 residues within 4Å: Chain A: E.1041, N.1043 Ligand excluded by PLIP NAG.9: 3 residues within 4Å: Chain A: N.1067, S.1070, F.1072 Ligand excluded by PLIP NAG.10: 1 residues within 4Å: Chain B: N.305 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain A: L.818, I.819, C.820 Chain B: N.589 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain B: N.678, N.679 Ligand excluded by PLIP NAG.13: 4 residues within 4Å: Chain B: T.685, N.686, Q.891, Q.1040 Ligand excluded by PLIP NAG.14: 4 residues within 4Å: Chain B: Y.765, N.770, S.772, Q.773 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain B: E.1041, R.1042, N.1043 Ligand excluded by PLIP NAG.16: 4 residues within 4Å: Chain B: N.1067, T.1069, F.1072, P.1081 Ligand excluded by PLIP NAG.17: 2 residues within 4Å: Chain A: K.434 Chain C: N.214 Ligand excluded by PLIP NAG.18: 3 residues within 4Å: Chain C: D.254, E.255, N.256 Ligand excluded by PLIP NAG.19: 3 residues within 4Å: Chain B: I.819, C.820 Chain C: N.589 Ligand excluded by PLIP NAG.20: 2 residues within 4Å: Chain C: N.678, I.1099 Ligand excluded by PLIP NAG.21: 2 residues within 4Å: Chain C: N.686, Q.891 Ligand excluded by PLIP NAG.22: 4 residues within 4Å: Chain C: Y.765, N.770, S.772, Q.773 Ligand excluded by PLIP NAG.23: 3 residues within 4Å: Chain C: A.675, E.1041, N.1043 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toelzer, C. et al., The free fatty acid-binding pocket is a conserved hallmark in pathogenic beta-coronavirus spike proteins from SARS-CoV to Omicron. Sci Adv (2022)

Release Date

2023-02-15

Peptides

Spike glycoprotein,Fibritin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Spike glycoprotein,Fibritin

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