SMTL ID : 7zhb.1

Catalytic domain of UDP-Glucose Glycoprotein Glucosyltransferase from Chaetomium thermophilum in complex with UDP-glucose (conformation 2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: H.42, N.44 No protein-ligand interaction detected (PLIP)

1 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)

UPG.2: 20 residues within 4Å: Chain A: V.22, A.23, S.24, Y.28, Q.93, W.97, K.100, D.119, D.121, S.176, A.177, N.211, D.213, Q.214, D.252, L.253, C.254, N.255, K.263 Ligands: CA.3 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.24, A:S.24, A:Y.28, A:Q.93, A:K.100, A:K.100, A:D.119, A:D.252, A:L.253, A:N.255 Salt bridges: A:K.263, A:K.263 pi-Stacking: A:Y.28

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: D.119, D.121, D.252 Ligands: UPG.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.119, A:D.121, A:D.121, A:D.252

3 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.4: 1 residues within 4Å: Chain A: Q.197 No protein-ligand interaction detected (PLIP) IPA.5: 6 residues within 4Å: Chain A: Y.163, W.164, L.202, S.208, L.209, H.219 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.163, A:L.209 Hydrogen bonds: A:L.209 IPA.6: 3 residues within 4Å: Chain A: R.30, L.264, R.268 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.30, A:R.30, A:R.268

3 x PDO: 1,3-PROPANDIOL(Non-covalent)

PDO.7: 8 residues within 4Å: Chain A: H.26, E.29, R.30, N.33, S.59, F.60, F.63, I.281 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.33 PDO.8: 2 residues within 4Å: Chain A: Q.197, Q.198 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.197 Hydrogen bonds: A:Q.198 PDO.9: 3 residues within 4Å: Chain A: P.272, E.273, K.276 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.276, A:K.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caputo, A.T. et al., A quinolin-8-ol sub-millimolar inhibitor of UGGT, the ER glycoprotein quality control checkpoint. To Be Published

Release Date

2022-04-20

Peptides

UDP-glucose-glycoprotein glucosyltransferase-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-glucose-glycoprotein glucosyltransferase-like protein

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