SMTL ID : 7zhn.1

Crystal structure of TTBK1 in complex with AMG28

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: R.142, R.183, R.189 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.189 Water bridges: A:R.183, A:R.183 Salt bridges: A:R.142, A:R.170, A:R.183

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: E.47, R.81, Q.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.47, A:R.81, A:Q.97 EDO.3: 6 residues within 4Å: Chain A: L.73, Q.74, G.75, K.76, V.79, R.81 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.74, A:G.75, A:K.76 EDO.4: 5 residues within 4Å: Chain A: N.102, S.147, N.148, L.164 Ligands: VP7.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.102 EDO.5: 3 residues within 4Å: Chain A: V.197, W.212, H.246 2 PLIP interactions: 2 interactions with chain A Water bridges: A:V.197, A:H.246 EDO.6: 6 residues within 4Å: Chain A: Y.172, V.179, G.206, R.207, Y.269, F.270 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.207, A:R.207 Water bridges: A:H.208, A:Y.269 EDO.7: 1 residues within 4Å: Chain A: R.46 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.46

1 x VP7: 4-(2-amino-5,6,7,8-tetrahydropyrimido[4',5':3,4]cyclohepta[1,2-b]indol-11-yl)-2-methylbut-3-yn-2-ol(Non-covalent)

VP7.8: 14 residues within 4Å: Chain A: I.29, I.37, A.50, K.52, E.66, C.80, M.96, Q.97, L.98, Q.99, L.164, D.165, F.166 Ligands: EDO.4 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.29, A:I.37, A:K.52, A:E.66, A:D.165, A:F.166 Hydrogen bonds: A:E.66, A:Q.97, A:Q.99, A:D.165, A:F.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bashore, F.M. et al., Modulation of tau tubulin kinases (TTBK1 and TTBK2) impacts ciliogenesis. Sci Rep (2023)

Release Date

2023-04-19

Peptides

Tau-tubulin kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tau-tubulin kinase 1

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