SMTL ID : 7zho.1

Crystal structure of TTBK1 in complex with compound 3 (7-001)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: R.142, R.183, R.189 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.142, A:R.170 Salt bridges: A:R.142, A:R.183, A:R.189

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: Y.172, V.179, G.206, R.207, Y.269, F.270 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.207, A:R.207 Water bridges: A:Y.269, A:T.271 EDO.3: 4 residues within 4Å: Chain A: G.177, V.179, R.207, K.272 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.177, A:R.207, A:R.207 Water bridges: A:K.272 EDO.4: 4 residues within 4Å: Chain A: K.76, E.132, A.133, S.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.136 Water bridges: A:A.133 EDO.5: 6 residues within 4Å: Chain A: D.143, K.145, N.148, D.165, G.167, L.168 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.143, A:K.145, A:K.145, A:N.148 Water bridges: A:D.165, A:D.165

1 x IQR: 4-[3-(2-azanylpyrimidin-4-yl)-1~{H}-indol-5-yl]-2-methyl-but-3-yn-2-ol(Non-covalent)

IQR.6: 13 residues within 4Å: Chain A: I.29, I.37, A.50, K.52, E.66, C.80, M.96, Q.97, L.98, Q.99, L.164, D.165, F.166 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.29, A:I.37, A:K.52, A:L.164, A:D.165, A:F.166 Hydrogen bonds: A:E.66, A:Q.97, A:Q.99, A:D.165, A:F.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bashore, F.M. et al., Modulation of tau tubulin kinases (TTBK1 and TTBK2) impacts ciliogenesis. Sci Rep (2023)

Release Date

2023-04-19

Peptides

Tau-tubulin kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tau-tubulin kinase 1

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