SMTL ID : 7zhq.1

Crystal structure of TTBK1 in complex with compound 10 (7-009)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: R.142, R.183, R.189 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.189 Water bridges: A:R.170, A:R.183 Salt bridges: A:R.142, A:R.183

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: E.47, R.81, Q.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.47, A:R.81, A:Q.97 EDO.3: 5 residues within 4Å: Chain A: N.102, S.147, N.148, L.164 Ligands: IRD.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.102 Water bridges: A:N.148 EDO.4: 2 residues within 4Å: Chain A: M.41, R.46 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.46 EDO.5: 5 residues within 4Å: Chain A: Q.74, G.75, K.76, V.79, R.81 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.75, A:K.76 EDO.6: 3 residues within 4Å: Chain A: T.191, R.193, Y.194 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.193 EDO.7: 6 residues within 4Å: Chain A: Y.172, V.179, G.206, R.207, Y.269, F.270 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.207, A:R.207 Water bridges: A:Y.269, A:T.271 EDO.8: 4 residues within 4Å: Chain A: V.197, W.212, H.246 Ligands: EDO.9 2 PLIP interactions: 2 interactions with chain A Water bridges: A:V.197, A:H.246 EDO.9: 6 residues within 4Å: Chain A: E.245, R.247, L.261, D.262, A.265 Ligands: EDO.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.245, A:D.262, A:D.262 Water bridges: A:H.246 EDO.10: 3 residues within 4Å: Chain A: H.258, L.259, D.262 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.258

1 x IRD: (3~{S})-1-(4-azanyl-3,5,12-triazatetracyclo[9.7.0.0^{2,7}.0^{13,18}]octadeca-1(11),2,4,6,13(18),14,16-heptaen-16-yl)-3-methyl-pent-1-yn-3-ol(Non-covalent)

IRD.11: 14 residues within 4Å: Chain A: I.29, I.37, A.50, K.52, E.66, C.80, M.96, Q.97, L.98, Q.99, L.164, D.165, F.166 Ligands: EDO.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.29, A:I.37, A:K.52, A:E.66, A:D.165, A:F.166, A:F.166 Hydrogen bonds: A:E.66, A:Q.97, A:Q.99, A:D.165, A:F.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bashore, F.M. et al., Modulation of tau tubulin kinases (TTBK1 and TTBK2) impacts ciliogenesis. Sci Rep (2023)

Release Date

2023-04-19

Peptides

Tau-tubulin kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tau-tubulin kinase 1

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