SMTL ID : 7zht.1 (1 other biounit)

Leishmania donovani Glucose 6-Phosphate Dehydrogenase apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: R.420, D.421, R.432 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.421 EDO.2: 5 residues within 4Å: Chain A: A.272, N.275, S.277, N.278 Ligands: EDO.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.275, A:S.277, A:N.278, A:N.278 EDO.4: 4 residues within 4Å: Chain B: A.272, N.275, N.278 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.275, B:N.278 EDO.5: 8 residues within 4Å: Chain B: E.345, P.346, I.347, T.348, N.351, R.387, L.388, N.389 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.345, B:T.348, B:N.351, B:N.389 EDO.6: 8 residues within 4Å: Chain B: Q.310, N.311, T.314, Q.315, L.341, V.500, E.504, A.508 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 8 residues within 4Å: Chain A: Q.283, T.285, K.287, K.403, E.409, Y.412, R.416, R.534 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.283, A:Q.283, A:T.285, A:Y.412, A:Y.412 Salt bridges: A:K.287, A:K.403, A:R.416, A:R.534 SO4.7: 5 residues within 4Å: Chain B: Q.283, T.285, K.287, K.403, R.534 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.285 Water bridges: B:R.534, B:R.534 Salt bridges: B:K.287, B:K.403, B:R.534

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Berneburg, I. et al., Crystal structure of Leishmania donovani glucose 6-phosphate dehydrogenase reveals a unique N-terminal domain. Commun Biol (2022)

Release Date

2022-12-14

Peptides

Glucose-6-phosphate 1-dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucose-6-phosphate 1-dehydrogenase

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