- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 4 residues within 4Å:- Chain A: K.254, Q.440, D.482, A.483
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.254, A:Q.440, A:A.483
EDO.3: 2 residues within 4Å:- Chain A: S.69, P.177
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.69
EDO.7: 4 residues within 4Å:- Chain A: E.422, V.423
- Chain B: R.268, K.324
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:V.423, A:H.424, B:R.268, B:R.268, B:K.324
EDO.9: 8 residues within 4Å:- Chain B: R.224, D.300, N.301, I.302, G.303, R.306, C.380, D.520
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.224, B:R.306, B:R.306, B:D.520
- 7 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 4 residues within 4Å:- Chain A: R.420, D.421, R.432, K.549
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.421
- Salt bridges: A:R.420, A:R.432, A:K.549
SO4.5: 5 residues within 4Å:- Chain A: Q.283, T.285, K.287, K.403, R.534
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Q.283, A:T.285, A:T.285
- Salt bridges: A:K.287, A:K.403, A:R.534
SO4.6: 5 residues within 4Å:- Chain A: E.66, Q.67, R.70, N.182, W.213
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.66, A:E.66, A:Q.67, A:N.182
SO4.11: 5 residues within 4Å:- Chain B: Y.412, R.416, E.434, Y.446, K.448
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.412, B:E.434
- Salt bridges: B:R.416, B:K.448
SO4.12: 5 residues within 4Å:- Chain B: Q.283, T.285, K.287, K.403, R.534
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.283, B:T.285
- Salt bridges: B:K.287, B:K.403, B:R.534
SO4.13: 4 residues within 4Å:- Chain B: R.420, D.421, R.432, K.549
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.421
- Salt bridges: B:R.432, B:K.549
SO4.14: 3 residues within 4Å:- Chain A: R.268
- Chain B: E.422, H.424
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Salt bridges: B:H.424
- Hydrogen bonds: A:R.268
- 1 x BG6: 6-O-phosphono-beta-D-glucopyranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Berneburg, I. et al., Crystal structure of Leishmania donovani glucose 6-phosphate dehydrogenase reveals a unique N-terminal domain. Commun Biol (2022)
- Release Date
- 2022-12-14
- Peptides
- Glucose-6-phosphate 1-dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 1 x BG6: 6-O-phosphono-beta-D-glucopyranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Berneburg, I. et al., Crystal structure of Leishmania donovani glucose 6-phosphate dehydrogenase reveals a unique N-terminal domain. Commun Biol (2022)
- Release Date
- 2022-12-14
- Peptides
- Glucose-6-phosphate 1-dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B