SMTL ID : 7zij.1

Crystal structure of human tryptophan hydroxylase 1 in complex with inhibitor KM-05-080

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x IVW: 8-(1~{H}-benzimidazol-2-ylmethyl)-3-cyclopropyl-7-(phenylmethyl)purine-2,6-dione(Non-covalent)

IVW.1: 15 residues within 4Å: Chain A: G.159, Y.160, L.161, S.162, P.163, F.166, T.178, P.193, H.197, H.202, A.234, Y.237, E.242, F.243 Ligands: FE.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.160, A:Y.160, A:T.178, A:P.193, A:A.234, A:Y.237, A:F.243 Hydrogen bonds: A:L.161, A:L.161 pi-Stacking: A:F.166, A:F.166

1 x FE: FE (III) ION(Non-covalent)

FE.2: 4 residues within 4Å: Chain A: H.197, H.202, E.242 Ligands: IVW.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.197, A:H.202, A:E.242, A:E.242, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Specker, E. et al., Structure-Based Design of Xanthine-Benzimidazole Derivatives as Novel and Potent Tryptophan Hydroxylase Inhibitors. J.Med.Chem. (2022)

Release Date

2022-09-07

Peptides

Tryptophan 5-hydroxylase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tryptophan 5-hydroxylase 1

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