SMTL ID : 7ziz.1

X-ray structure of the dead variant haloalkane dehalogenase HaloTag7-D106A bound to a pentanol tetramethylrhodamine ligand (TMR-Hy5)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x IYL: [9-[2-carboxy-5-[2-[2-(5-oxidanylpentoxy)ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium(Non-covalent)

IYL.1: 15 residues within 4Å: Chain A: W.105, F.142, A.143, T.146, F.147, Q.163, V.165, E.168, G.169, T.170, P.172, M.173, V.243, N.270 Ligands: CL.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.165, A:T.170 Hydrogen bonds: A:W.105, A:T.146

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: N.39, W.105, F.166, F.203, P.204, L.207 Ligands: IYL.1 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: F.6, S.42, G.68, K.69, H.186 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.68, A:H.186 Water bridges: A:K.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kompa, J. et al., Exchangeable HaloTag Ligands for Super-Resolution Fluorescence Microscopy. J.Am.Chem.Soc. (2023)

Release Date

2023-02-22

Peptides

Haloalkane dehalogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Haloalkane dehalogenase

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