SMTL ID : 7zj0.1 (1 other biounit)

X-ray structure of the haloalkane dehalogenase HaloTag7 bound to a pentylmethanesulfonamide tetramethylrhodamine ligand (TMR-S5)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x IYO: [9-[2-carboxy-5-[2-[2-[5-(methylsulfonylamino)pentoxy]ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium(Non-covalent)

IYO.1: 19 residues within 4Å: Chain A: N.39, D.104, W.105, F.142, A.143, T.146, F.147, Q.163, V.165, F.166, E.168, G.169, T.170, M.173, G.174, F.203, L.207, V.243, N.270 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.165, A:F.166, A:N.270 Hydrogen bonds: A:N.39, A:D.104, A:T.146, A:T.146

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: F.6, S.42, G.68, K.69, H.186 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.186, A:H.186 Water bridges: A:F.6, A:K.69 GOL.3: 4 residues within 4Å: Chain A: V.182, D.185, H.186, E.189 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.189 GOL.4: 2 residues within 4Å: Chain A: R.116, N.117 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.117 Water bridges: A:N.117 GOL.5: 5 residues within 4Å: Chain A: R.131, P.132, M.224, H.228, E.249 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.131, A:P.132, A:E.249 Water bridges: A:M.224, A:H.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kompa, J. et al., Exchangeable HaloTag Ligands for Super-Resolution Fluorescence Microscopy. J.Am.Chem.Soc. (2023)

Release Date

2023-02-22

Peptides

Haloalkane dehalogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Haloalkane dehalogenase

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