SMTL ID : 7zjm.1

Crystal structure of a complex between CspZ from Borrelia burgdorferi strain B408 and human FH SCR domains 6-7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

hetero-1-1-mer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: E.101, H.115 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.101, A:E.101, A:H.115 ZN.2: 3 residues within 4Å: Chain A: E.185, E.210, G.211 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.185, A:E.185, A:E.210, H2O.1 ZN.8: 4 residues within 4Å: Chain B: H.12, F.41, Q.88, E.113 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.12, B:E.113, B:E.113, H2O.1 ZN.9: 3 residues within 4Å: Chain B: D.9 Ligands: IMD.3, IMD.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.9 ZN.10: 3 residues within 4Å: Chain B: E.18 Ligands: IMD.5, IMD.7 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.18, B:E.18 ZN.11: 3 residues within 4Å: Chain A: E.47, N.49 Chain B: H.82 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Metal complexes: B:H.82, A:E.47 ZN.12: 4 residues within 4Å: Chain A: D.55, S.57 Chain B: E.39, H.40 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Metal complexes: B:H.40, A:D.55, A:D.55

4 x IMD: IMIDAZOLE(Non-covalent)

IMD.3: 3 residues within 4Å: Chain B: D.9 Ligands: IMD.4, ZN.9 No protein-ligand interaction detected (PLIP) IMD.4: 3 residues within 4Å: Chain B: D.9 Ligands: IMD.3, ZN.9 No protein-ligand interaction detected (PLIP) IMD.5: 7 residues within 4Å: Chain B: Y.7, P.8, D.9, E.18, R.22 Ligands: IMD.7, ZN.10 No protein-ligand interaction detected (PLIP) IMD.7: 6 residues within 4Å: Chain B: G.13, G.14, E.18, Y.36 Ligands: IMD.5, ZN.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Y.36

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 6 residues within 4Å: Chain B: Q.88, G.89, T.110, C.111, M.112, E.113 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.88, B:E.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marcinkiewicz, A.L. et al., Structural evolution of an immune evasion determinant shapes pathogen host tropism. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-04-19

Peptides

CspZ: A
Complement factor H: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CspZ

Complement factor H

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