SMTL ID : 7zju.1 (1 other biounit)

Structure of human USPL1 in covalent complex with SUMO3-2Br probe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.146, C.149, C.182, C.185 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.146, A:C.149, A:C.182, A:C.185

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: Q.217, H.218 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.218

1 x OXU: 2-bromanylethanamine(Covalent)

OXU.3: 6 residues within 4Å: Chain A: A.19, C.21, M.115, N.240, H.241 Chain B: G.90 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.240

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: E.34, L.247 Ligands: CA.5 Ligand excluded by PLIP

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 2 residues within 4Å: Chain A: H.32 Ligands: CL.4 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.32, H2O.1, H2O.2, H2O.2, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Z. et al., Native Semisynthesis of Isopeptide-Linked Substrates for Specificity Analysis of Deubiquitinases and Ubl Proteases. J.Am.Chem.Soc. (2023)

Release Date

2023-09-27

Peptides

SUMO-specific isopeptidase USPL1: A
Small ubiquitin-related modifier 3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SUMO-specific isopeptidase USPL1

Small ubiquitin-related modifier 3

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