SMTL ID : 7zke.1

Mot1:TBP:DNA - pre-hydrolysis state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain D: K.1328, D.1433, E.1434, G.1732 Ligands: ADP.2, BEF.3 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.1433

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 19 residues within 4Å: Chain D: A.1295, E.1296, L.1297, R.1298, Q.1301, M.1324, G.1325, G.1327, K.1328, T.1329, L.1330, H.1371, Y.1379, G.1732, N.1734, R.1762, I.1763 Ligands: MG.1, BEF.3 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:Q.1301, D:Q.1301, D:G.1325, D:G.1327, D:K.1328, D:T.1329, D:T.1329, D:T.1329, D:H.1371, D:N.1734 Salt bridges: D:K.1328, D:R.1762, D:R.1762

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.3: 10 residues within 4Å: Chain D: M.1324, K.1328, E.1434, T.1461, G.1462, G.1732, Q.1755, R.1762 Ligands: MG.1, ADP.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Woike, S. et al., Structural basis for TBP displacement from TATA box DNA by the Swi2/Snf2 ATPase Mot1. Nat.Struct.Mol.Biol. (2023)

Release Date

2023-04-26

Peptides

Putative tata-box binding protein: C
Helicase-like protein: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
D

D
E

Putative tata-box binding protein

Helicase-like protein

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