SMTL ID : 7zks.1

SRPK1 IN COMPLEX WITH INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

monomer

Ligands

1 x IXQ: N-[3-[[[2-(6-chloranyl-5-fluoranyl-1H-benzimidazol-2-yl)pyrimidin-4-yl]amino]methyl]pyridin-2-yl]-N-methyl-methanesulfonamide(Non-covalent)

IXQ.1: 18 residues within 4Å: Chain A: L.37, G.38, W.39, G.40, V.45, A.58, F.116, E.117, V.118, L.119, G.120, H.121, E.168, L.171, Y.178, L.182, A.228 Ligands: CL.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.116, A:V.118, A:L.171, A:L.171, A:A.228 Hydrogen bonds: A:L.119, A:G.120 Halogen bonds: A:Y.178

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: F.116, A.228, D.229 Ligands: IXQ.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schroder, M. et al., MSC-1186, a Highly Selective Pan-SRPK Inhibitor Based on an Exceptionally Decorated Benzimidazole-Pyrimidine Core. J.Med.Chem. (2023)

Release Date

2023-02-22

Peptides

SRSF protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SRSF protein kinase 1