SMTL ID : 7zli.1

Cryo-EM structure of C-mannosyltransferase CeDPY19, in complex with Dol25-P-Man and bound to CMT2-Fab and anti-Fab nanobody

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x IZY: [(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl] [(3~{S},6~{Z},10~{E},14~{E})-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraenyl] hydrogen phosphate(Non-covalent)

IZY.1: 24 residues within 4Å: Chain D: E.71, W.262, F.264, F.267, F.270, T.271, H.375, I.376, I.379, L.380, Y.395, F.401, C.460, C.461, V.464, M.465, L.468, I.469, R.471, L.472, P.576, H.577, Y.578, E.579 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:F.264, D:F.267, D:T.271, D:I.376, D:I.379, D:L.380, D:F.401, D:V.464, D:V.464, D:I.469, D:L.472 Hydrogen bonds: D:W.262, D:Y.395, D:Y.578, D:E.579 Water bridges: D:Q.263 Salt bridges: D:R.471, D:H.577

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bloch, J.S. et al., Structure, sequon recognition and mechanism of tryptophan C-mannosyltransferase. Nat.Chem.Biol. (2023)

Release Date

2023-01-11

Peptides

CMT2-Fab heavy chain: A
Anti-Fab nanobody: B
CMT2-Fab light chain: C
C-mannosyltransferase dpy-19: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
K

C
L

D
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

CMT2-Fab heavy chain

Anti-Fab nanobody

CMT2-Fab light chain

C-mannosyltransferase dpy-19

Related Entries With Identical Sequence