SMTL ID : 7zlu.3 (2 other biounits)

Catalytic domain of UDP-Glucose Glycoprotein Glucosyltransferase from Chaetomium thermophilum in complex with UDP-2-deoxy-2-fluoro-D-glucose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x U2F: URIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE(Non-covalent)

U2F.1: 18 residues within 4Å: Chain A: A.23, S.24, Y.28, Q.93, W.97, K.100, D.119, D.121, S.176, A.177, N.211, D.213, D.252, L.253, C.254, N.255, K.263 Ligands: CA.3 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.24, A:S.24, A:Q.93, A:K.100, A:K.100, A:D.119, A:N.211, A:N.255 Water bridges: A:K.263, A:K.263 Salt bridges: A:K.263, A:K.263 pi-Stacking: A:Y.28

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: H.42, T.43, N.44 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.44

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: D.119, D.121, D.252 Ligands: U2F.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.119, A:D.121, A:D.121, A:D.252, H2O.1

1 x PDO: 1,3-PROPANDIOL(Non-covalent)

PDO.4: 6 residues within 4Å: Chain A: S.149, R.150, V.151, E.152, S.241, D.242 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.149, A:R.150, A:R.150, A:V.151, A:D.242, A:D.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guay, K.P. et al., A quinolin-8-ol sub-millimolar inhibitor of UGGT, the ER glycoprotein folding quality control checkpoint. Iscience (2023)

Release Date

2022-06-22

Peptides

UDP-glucose-glycoprotein glucosyltransferase-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

UDP-glucose-glycoprotein glucosyltransferase-like protein

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