SMTL ID : 7zm3.1

Crystal structure of HsaD from Mycobacterium tuberculosis in complex with Cyclipostin-like inhibitor CyC17

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

homo-tetramer

Ligands

4 x E9H: hexadecyl dihydrogen phosphate(Covalent)

E9H.1: 6 residues within 4Å: Chain A: G.44, G.45, S.114, L.115, L.158, H.269 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.45, A:L.115 Water bridges: A:N.244 Salt bridges: A:H.269 E9H.3: 6 residues within 4Å: Chain B: G.44, G.45, S.114, L.115, L.158, H.269 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.45, B:L.115 Water bridges: B:N.244 Salt bridges: B:H.269 E9H.5: 6 residues within 4Å: Chain C: G.44, G.45, S.114, L.115, V.243, H.269 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:G.45, C:L.115 Water bridges: C:N.113, C:N.244 Salt bridges: C:H.269 E9H.7: 6 residues within 4Å: Chain D: G.44, G.45, S.114, L.115, V.243, H.269 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:G.45, D:L.115 Water bridges: D:N.113, D:N.244 Salt bridges: D:H.269

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.157, R.175, V.176, K.181 Chain C: K.156 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain C Water bridges: A:R.157, A:R.157, A:K.181, C:K.156 Salt bridges: A:R.157, A:R.175, A:K.181, C:K.156 SO4.4: 5 residues within 4Å: Chain B: R.157, R.175, V.176, K.181 Chain D: K.156 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain D Water bridges: B:R.157, B:R.157, B:K.181, D:K.156 Salt bridges: B:R.157, B:R.175, B:K.181, D:K.156 SO4.6: 4 residues within 4Å: Chain A: K.156 Chain C: R.157, R.175, K.181 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain A Salt bridges: C:R.157, C:R.175, C:K.181, A:K.156 Water bridges: A:K.156 SO4.8: 4 residues within 4Å: Chain B: K.156 Chain D: R.157, R.175, K.181 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain B Salt bridges: D:R.157, D:R.175, D:K.181, B:K.156 Water bridges: B:K.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barelier, S. et al., Direct capture, inhibition and crystal structure of HsaD (Rv3569c) from M. tuberculosis. Febs J. (2023)

Release Date

2022-09-28

Peptides

4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
B

D
B

4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase

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