- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 2 x JE5: 8-[[4-[2-[2-[2-[2-[(azanylidene-$l^{4}-azanylidene)amino]ethoxy]ethoxy]ethoxy]ethylcarbamoyl]phenyl]sulfonylamino]-~{N}-(cyclohexylmethyl)-6-fluoranyl-4-oxidanylidene-chromene-2-carboxamide(Non-covalent)
JE5.3: 23 residues within 4Å:- Chain A: A.227, A.228, R.229, R.271, E.273, G.274, T.278, H.279, N.280, P.281, F.283, S.285, E.440, L.441, C.442, N.443, G.494, L.495, G.496, R.499, I.510
- Chain B: E.237
- Ligands: LYS.4
19 PLIP interactions:18 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:R.271, A:E.273, A:H.279, A:F.283, A:F.283, A:N.443
- Hydrogen bonds: A:R.229, A:R.271, A:E.273, A:G.274, A:N.280, B:E.237
- Water bridges: A:H.279, A:R.499, A:R.499, A:R.499
- pi-Stacking: A:H.279, A:F.283
- Halogen bonds: A:R.271
JE5.6: 25 residues within 4Å:- Chain A: N.236, E.237, E.239
- Chain B: A.227, A.228, R.229, R.271, E.273, G.274, T.278, H.279, N.280, P.281, F.283, S.285, E.440, L.441, N.443, E.471, G.494, L.495, G.496, R.499, I.510
- Ligands: LYS.7
23 PLIP interactions:22 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:R.271, B:E.273, B:H.279, B:F.283, B:F.283, B:N.443
- Hydrogen bonds: B:R.229, B:R.229, B:R.271, B:E.273, B:E.273, B:N.280, A:E.237
- Water bridges: B:A.227, B:H.279, B:E.440, B:E.471, B:R.499, B:R.499, B:R.499
- pi-Stacking: B:H.279, B:F.283
- Halogen bonds: B:R.271
- 2 x LYS: LYSINE(Non-covalent)
LYS.4: 14 residues within 4Å:- Chain A: G.225, A.247, E.249, R.271, E.287, Y.289, N.443, A.444, Y.445, E.447, G.492, W.493, G.494
- Ligands: JE5.3
7 PLIP interactions:7 interactions with chain A,- Hydrophobic interactions: A:Y.445
- Hydrogen bonds: A:G.225, A:E.249, A:Y.289, A:N.443, A:E.447
- Water bridges: A:R.271
LYS.7: 14 residues within 4Å:- Chain B: G.225, A.247, E.249, R.271, E.287, Y.289, N.443, A.444, Y.445, E.447, G.492, W.493, G.494
- Ligands: JE5.6
5 PLIP interactions:5 interactions with chain B,- Hydrophobic interactions: B:Y.445
- Hydrogen bonds: B:G.225, B:N.443, B:E.447
- Water bridges: B:R.271
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Milne, R. et al., Toolkit of Approaches To Support Target-Focused Drug Discovery for Plasmodium falciparum Lysyl tRNA Synthetase. Acs Infect Dis. (2022)
- Release Date
- 2022-09-07
- Peptides
- Lysine-tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 2 x JE5: 8-[[4-[2-[2-[2-[2-[(azanylidene-$l^{4}-azanylidene)amino]ethoxy]ethoxy]ethoxy]ethylcarbamoyl]phenyl]sulfonylamino]-~{N}-(cyclohexylmethyl)-6-fluoranyl-4-oxidanylidene-chromene-2-carboxamide(Non-covalent)
- 2 x LYS: LYSINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Milne, R. et al., Toolkit of Approaches To Support Target-Focused Drug Discovery for Plasmodium falciparum Lysyl tRNA Synthetase. Acs Infect Dis. (2022)
- Release Date
- 2022-09-07
- Peptides
- Lysine-tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D