- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 14 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 5 residues within 4Å:- Chain A: T.194, D.196, R.209, R.245
- Ligands: NDP.1
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:T.194
- Water bridges: A:G.195, A:D.196, A:D.196, A:R.209, A:R.209, A:R.245
- Salt bridges: A:R.209, A:R.245
SO4.3: 4 residues within 4Å:- Chain A: S.163, T.222, G.223, A.224
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:S.163, A:T.165, A:T.222, A:T.222, A:G.223
- Water bridges: A:T.165, A:T.165
SO4.4: 4 residues within 4Å:- Chain A: E.267, N.270, R.274, A.308
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.270
- Water bridges: A:E.267, A:R.274
- Salt bridges: A:R.274
SO4.5: 5 residues within 4Å:- Chain A: P.141, T.142, F.143, N.148, L.230
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.142, A:T.142, A:N.148
- Water bridges: A:K.138
SO4.8: 5 residues within 4Å:- Chain B: T.194, D.196, R.209, R.245
- Ligands: NDP.7
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:T.194, B:T.194
- Water bridges: B:D.196, B:R.209, B:R.209, B:R.245
- Salt bridges: B:R.209, B:R.245
SO4.9: 4 residues within 4Å:- Chain B: S.163, T.222, G.223, A.224
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.163, B:G.223
- Water bridges: B:S.163, B:T.165
SO4.10: 4 residues within 4Å:- Chain B: E.267, N.270, R.274, A.308
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.270
- Water bridges: B:R.274, B:R.274
- Salt bridges: B:R.274
SO4.13: 5 residues within 4Å:- Chain C: T.194, D.196, R.209, R.245
- Ligands: NDP.12
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:T.194
- Water bridges: C:G.195, C:D.196, C:D.196, C:R.209, C:R.209, C:R.245
- Salt bridges: C:R.209, C:R.245
SO4.14: 4 residues within 4Å:- Chain C: S.163, T.222, G.223, A.224
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:S.163, C:T.165, C:T.222, C:T.222, C:G.223
- Water bridges: C:T.165, C:T.165
SO4.15: 4 residues within 4Å:- Chain C: E.267, N.270, R.274, A.308
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.270
- Water bridges: C:E.267, C:R.274
- Salt bridges: C:R.274
SO4.16: 5 residues within 4Å:- Chain C: P.141, T.142, F.143, N.148, L.230
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:T.142, C:T.142, C:N.148
- Water bridges: C:K.138
SO4.19: 5 residues within 4Å:- Chain D: T.194, D.196, R.209, R.245
- Ligands: NDP.18
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:T.194, D:T.194
- Water bridges: D:D.196, D:R.209, D:R.209, D:R.245
- Salt bridges: D:R.209, D:R.245
SO4.20: 4 residues within 4Å:- Chain D: S.163, T.222, G.223, A.224
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:S.163, D:G.223
- Water bridges: D:S.163, D:T.165
SO4.21: 4 residues within 4Å:- Chain D: E.267, N.270, R.274, A.308
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:N.270
- Water bridges: D:R.274, D:R.274
- Salt bridges: D:R.274
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mattioli, E.J. et al., Structural snapshots of nitrosoglutathione binding and reactivity underlying S-nitrosylation of photosynthetic GAPDH. Redox Biol (2022)
- Release Date
- 2022-07-20
- Peptides
- Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
OB
RC
OD
R
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mattioli, E.J. et al., Structural snapshots of nitrosoglutathione binding and reactivity underlying S-nitrosylation of photosynthetic GAPDH. Redox Biol (2022)
- Release Date
- 2022-07-20
- Peptides
- Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
OB
RC
OD
R