SMTL ID : 7zr3.1

STRUCTURE OF ESTER-HYDROLASE EH0 FROM THE METAGENOME OF SORGHUM BICOLOR RHIZOSPHERE FROM THE HENFAES RESEARCH CENTRE (GWYNEDD, WALES)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 2 residues within 4Å: Chain A: S.217, L.257 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.217 ACT.2: 3 residues within 4Å: Chain A: G.170, R.171, S.172 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: W.148, P.152, V.190, S.253, S.254 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: P.83, R.141, P.149, A.150, D.153 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.141, A:R.141 GOL.5: 6 residues within 4Å: Chain A: P.88, D.139, Y.140, R.141, L.142, F.146 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.139, A:L.142, A:L.142 GOL.6: 3 residues within 4Å: Chain A: L.257, Y.283, A.286 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.257 Water bridges: A:Y.283, A:Y.283 GOL.8: 5 residues within 4Å: Chain B: G.33, F.34, F.37, V.64, A.312 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.33

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 5 residues within 4Å: Chain A: E.71, L.72, G.73, T.74, L.75 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.71, A:L.72, A:L.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Distaso, M. et al., The Mobility of the Cap Domain Is Essential for the Substrate Promiscuity of a Family IV Esterase from Sorghum Rhizosphere Microbiome. Appl.Environ.Microbiol. (2023)

Release Date

2022-12-28

Peptides

EH0: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

EH0