SMTL ID : 7zr8.1

OMI-38 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE RBD (local refinement)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: F.335, G.336, F.339, N.340, S.368 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.339 Hydrogen bonds: A:N.340, A:S.368, A:S.368

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nutalai, R. et al., Potent cross-reactive antibodies following Omicron breakthrough in vaccinees. Cell (2022)

Release Date

2022-06-01

Peptides

Spike glycoprotein,Fibritin: A
Omi-38 fab heavy chain: B
Omi-38 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike glycoprotein,Fibritin

Omi-38 fab heavy chain

Omi-38 Fab light chain

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