SMTL ID : 7zrr.1

Crystal structure of human Urokinase-type plasminogen activator in complex with bicycle peptide inhibitor UK965

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 3 residues within 4Å: Chain A: V.58, T.59, N.98 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.98

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: K.116, H.275 No protein-ligand interaction detected (PLIP) EDO.3: 4 residues within 4Å: Chain A: Y.157, T.210, K.211, H.267 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.157, A:T.210, A:K.211, A:K.211

1 x NH2: AMINO GROUP(Non-functional Binders)

NH2.4: 3 residues within 4Å: Chain A: T.122 Chain B: C.15, G.16 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:G.16 Hydrogen bonds: A:T.122

1 x ZBR: 1,3,5-tris(bromomethyl)benzene(Covalent)

ZBR.5: 5 residues within 4Å: Chain A: D.81 Chain B: C.1, S.2, C.8, C.15 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caregnato, A. et al., Crystal structure of human Urokinase-type plasminogen activator in complex with bicycle peptide inhibitor UK965. To Be Published

Release Date

2023-11-15

Peptides

Urokinase-type plasminogen activator: A
synthetic peptide UK965: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Urokinase-type plasminogen activator

synthetic peptide UK965