SMTL ID : 7zrv.1

cryo-EM structure of omicron spike in complex with de novo designed binder, full map

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-2-mer
Ligands
18 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
12 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
16 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Gainza, P. et al., De novo design of protein interactions with learned surface fingerprints. Nature (2023)
Release Date
2023-03-08
Peptides
Spike glycoprotein,Envelope glycoprotein: ABC
de novo designed binder: DE
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
E
E
F

Spike glycoprotein,Envelope glycoprotein

de novo designed binder

Toggle Identical (DE)

Related Entries With Identical Sequence

7qo7.1 | 7qo9.1 | 7qti.1 | 7qtj.1 | 7qtk.1 | 7zsd.1 | 7zss.1 | 8aqu.1