SMTL ID : 7zus.1 (2 other biounits)

Crystal structure of ternary complex of Pol theta polymerase domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.676 Ligands: DG3.2 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.676, H2O.1, H2O.4

1 x DG3: 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

DG3.2: 14 residues within 4Å: Chain A: R.422, Q.469, E.471, F.495, R.515, K.519, Q.520, Y.523, Y.527, D.676 Chain B: C.3, C.4 Chain C: G.13 Ligands: MG.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.523 Hydrogen bonds: A:R.422, A:Q.469, A:Q.469, A:Y.523 Water bridges: A:D.466, A:N.606, A:E.677 Salt bridges: A:R.515, A:K.519, A:K.519, A:K.519 pi-Stacking: A:Y.523

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stockley, M.L. et al., Discovery, Characterization, and Structure-Based Optimization of Small-Molecule In Vitro and In Vivo Probes for Human DNA Polymerase Theta. J.Med.Chem. (2022)

Release Date

2022-10-12

Peptides

DNA polymerase theta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

DNA polymerase theta

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