SMTL ID : 7zvw.1

NuA4 Histone Acetyltransferase Complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-2-1-1-mer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 22 residues within 4Å: Chain B: N.13, G.14, S.15, G.16, M.17, K.19, Q.138, S.156, G.157, D.158, G.159, V.160, G.183, R.211, K.214, E.215, G.303, T.304, M.306, F.307, K.337 Ligands: MG.2 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:S.15, B:G.16, B:M.17, B:M.17, B:Q.138, B:D.158, B:G.159, B:V.160, B:G.183, B:K.214, B:G.303, B:T.304, B:T.304 Salt bridges: B:K.19, B:K.19 ATP.3: 15 residues within 4Å: Chain C: S.21, S.22, Y.23, R.24, D.156, G.158, H.159, R.245, K.248, E.249, A.392, T.393, L.395, I.396 Ligands: MG.4 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:S.21, C:S.22, C:Y.23, C:R.24, C:H.159, C:H.159, C:K.248, C:E.249, C:A.392 Salt bridges: C:K.26

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain B: G.157 Ligands: ATP.1 No protein-ligand interaction detected (PLIP) MG.4: 4 residues within 4Å: Chain C: S.21, S.22, Y.23 Ligands: ATP.3 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:S.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frechard, A. et al., The structure of the NuA4-Tip60 complex reveals the mechanism and importance of long-range chromatin modification. Nat.Struct.Mol.Biol. (2023)

Release Date

2023-05-31

Peptides

Transcription-associated protein: A
Actin: B
Actin: C
Chromatin modification-related protein EAF1: DG
SWR1-complex protein 4: E
Enhancer of polycomb-like protein: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
E

G
H

E
F

F
C

Transcription-associated protein

Actin

Actin

Chromatin modification-related protein EAF1

SWR1-complex protein 4

Enhancer of polycomb-like protein

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