SMTL ID : 7zwm.1

Pfs48/45 central and C-terminal domains bound to Fab fragments of monoclonal antibody 10D8 and 32F3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.69 Å

Oligo State

hetero-2-2-2-2-2-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: N.204, E.205 Chain E: S.53, N.54, Q.55, K.56 Ligands: NAG.3 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:K.56

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.2: 8 residues within 4Å: Chain F: T.202, N.204, E.205 Chain J: Y.51, S.53, N.54, Q.55, K.56 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:Q.55

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: N.190, T.192, N.193 Ligands: NAG-NAG-BMA.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.193 NAG.4: 2 residues within 4Å: Chain F: N.303, S.305 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:N.303, F:S.305 NAG.5: 4 residues within 4Å: Chain F: N.190, T.192, N.193, T.202 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:T.202 Hydrogen bonds: F:N.190, F:N.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ko, K.T. et al., Structure of the malaria vaccine candidate Pfs48/45 and its recognition by transmission blocking antibodies. Nat Commun (2022)

Release Date

2022-06-22

Peptides

Gametocyte surface protein P45/48: AF
32F3 heavy chain: BG
32F3 light chain: CH
10D8 heavy chain: DI
10D8 light chain: EJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
F

B
B

G
G

C
C

H
H

D
D

I
I

E
E

J
J

Gametocyte surface protein P45/48

32F3 heavy chain

32F3 light chain

10D8 heavy chain

10D8 light chain

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