- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ALA- TRP- VAL- ILE- PRO- ALA: ALA-TRP-VAL-ILE-PRO-ALA(Non-covalent)
ALA-TRP-VAL-ILE-PRO-ALA.1: 13 residues within 4Å:- Chain A: M.50, A.51, C.52, S.53, G.54, Y.57, H.115
- Chain B: F.10, N.20, R.23, L.24, R.27
- Ligands: EDO.13
11 PLIP interactions:7 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:F.10, B:N.20, B:L.24, A:Y.57, A:Y.57, A:Y.57, A:H.115
- Hydrogen bonds: B:N.20, B:N.20, B:R.23, B:R.27
ALA-TRP-VAL-ILE-PRO-ALA.2: 10 residues within 4Å:- Chain A: C.7, I.8, Q.9, F.10, T.11
- Chain B: F.88, R.93, L.94, H.115, T.119
13 PLIP interactions:9 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:I.8, A:Q.9, A:F.10, A:F.10, B:F.88, B:L.94, B:L.94, B:T.119
- Hydrogen bonds: A:Q.9, A:Q.9, A:T.11, A:T.11
- Water bridges: A:R.12
ALA-TRP-VAL-ILE-PRO-ALA.9: 13 residues within 4Å:- Chain A: F.10, N.20, R.23, L.24, R.27
- Chain B: M.50, A.51, C.52, S.53, G.54, Y.57, H.115
- Ligands: EDO.5
11 PLIP interactions:7 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:F.10, A:N.20, A:L.24, B:Y.57, B:Y.57, B:Y.57, B:H.115
- Hydrogen bonds: A:N.20, A:N.20, A:R.23, A:R.27
ALA-TRP-VAL-ILE-PRO-ALA.10: 10 residues within 4Å:- Chain A: F.88, R.93, L.94, H.115, T.119
- Chain B: C.7, I.8, Q.9, F.10, T.11
13 PLIP interactions:4 interactions with chain A, 9 interactions with chain B- Hydrophobic interactions: A:F.88, A:L.94, A:L.94, A:T.119, B:I.8, B:Q.9, B:F.10, B:F.10
- Hydrogen bonds: B:Q.9, B:Q.9, B:T.11
- Water bridges: B:T.11, B:R.12
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 2 residues within 4Å:- Chain A: I.71, N.72
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.70, A:N.72, A:N.72
EDO.4: 3 residues within 4Å:- Chain A: D.62, Q.63, L.64
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.61, A:Q.63, A:L.64
EDO.5: 7 residues within 4Å:- Chain A: F.10, H.13, D.16
- Chain B: F.88, H.115
- Ligands: ALA-TRP-VAL-ILE-PRO-ALA.9, ALA-TRP-VAL-ILE-PRO-ALA.9
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:D.16, B:H.115
EDO.6: 2 residues within 4Å:- Chain A: E.80, G.99
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.80
EDO.11: 2 residues within 4Å:- Chain B: I.71, N.72
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.70, B:N.72, B:N.72
EDO.12: 3 residues within 4Å:- Chain B: D.62, Q.63, L.64
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.61, B:Q.63, B:L.64
EDO.13: 7 residues within 4Å:- Chain A: F.88, H.115
- Chain B: F.10, H.13, D.16
- Ligands: ALA-TRP-VAL-ILE-PRO-ALA.1, ALA-TRP-VAL-ILE-PRO-ALA.1
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:H.13, B:D.16, B:D.16, A:H.115
EDO.14: 2 residues within 4Å:- Chain B: E.80, G.99
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.80
- 4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.7: 4 residues within 4Å:- Chain A: D.87, T.91, R.93
- Chain B: C.7
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:D.87
DMS.8: 3 residues within 4Å:- Chain A: E.98, I.101, I.124
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.127
DMS.15: 4 residues within 4Å:- Chain A: C.7
- Chain B: D.87, T.91, R.93
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:D.87
DMS.16: 3 residues within 4Å:- Chain B: E.98, I.101, I.124
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.98, B:S.127
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pierrat, O.A. et al., Discovering cell-active BCL6 inhibitors: effectively combining biochemical HTS with multiple biophysical techniques, X-ray crystallography and cell-based assays. Sci Rep (2022)
- Release Date
- 2022-11-16
- Peptides
- B-cell lymphoma 6 protein: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
SMTL ID : 7zwn.1
Crystal structure of human BCL6 BTB domain in complex with a WVIP peptide
B-cell lymphoma 6 protein
Toggle Identical (AB)Related Entries With Identical Sequence
6tof.1 | 6tog.1 | 6toh.1 | 6toi.1 | 6tok.1 | 6ton.1 | 6too.1 | 7gus.1 | 7gut.1 | 7guu.1 | 7guv.1 | 7guw.1 | 7gux.1 | 7guy.1 | 7guz.1 | 7gv0.1 | 7gv1.1 | 7gv2.1 | 7gv3.1 | 7gv4.1 | 7gv5.1 | 7gv6.1 | 7gv7.1 | 7gv8.1 | 7gv9.1 | 7gva.1 | 7gvb.1 | 7gvc.1 | 7gvd.1 | 7gve.1 more...less...7gvf.1 | 7gvg.1 | 7gvh.1 | 7gvi.1 | 7gvj.1 | 7gvk.1 | 7gvl.1 | 7gvm.1 | 7gvn.1 | 7gvo.1 | 7gvp.1 | 7gvq.1 | 7gvr.1 | 7gvs.1 | 7gvt.1 | 7gvu.1 | 7gvv.1 | 7gvw.1 | 7gvx.1 | 7gvy.1 | 7gvz.1 | 7gw0.1 | 7gw1.1 | 7gw2.1 | 7gw3.1 | 7gw4.1 | 7gw5.1 | 7gw6.1 | 7gw7.1 | 7gw8.1 | 7gw9.1 | 7gwa.1 | 7gwb.1 | 7gwc.1 | 7gwd.1 | 7gwe.1 | 7gwf.1 | 7gwg.1 | 7gwh.1 | 7gwi.1 | 7gwj.1 | 7gwk.1 | 7gwl.1 | 7gwm.1 | 7gwn.1 | 7gwo.1 | 7gwp.1 | 7gwq.1 | 7gwr.1 | 7gws.1 | 7gwt.1 | 7gwu.1 | 7gwv.1 | 7gww.1 | 7gwx.1 | 7gwy.1 | 7gwz.1 | 7gx0.1 | 7gx1.1 | 7gx2.1 | 7gx3.1 | 7gx4.1 | 7gx5.1 | 7gx6.1 | 7gx7.1 | 7gx8.1 | 7gx9.1 | 7gxa.1 | 7gxb.1 | 7gxc.1 | 7gxd.1 | 7gxe.1 | 7gxf.1 | 7gxg.1 | 7gxh.1 | 7gxi.1 | 7gxj.1 | 7gxk.1 | 7gxl.1 | 7gxm.1 | 7gxn.1 | 7gxo.1 | 7gxp.1 | 7gxq.1 | 7gxr.1 | 7gxs.1 | 7gxt.1 | 7gxu.1 | 7gxv.1 | 7gxw.1 | 7gxx.1 | 7gxy.1 | 7gxz.1 | 7gy0.1 | 7gy1.1 | 7gy2.1 | 7gy3.1 | 7oke.1 | 7okf.1 | 7okg.1 | 7okh.1 | 7oki.1 | 7okj.1 | 7okk.1 | 7okl.1 | 7okm.1 | 7q7s.1 | 7q7t.1 | 7zwo.1 | 7zwp.1 | 7zwr.1 | 7zws.1 | 7zwu.1 | 7zwv.1 | 7zwx.1 | 7zwy.1 | 7zwz.1