- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.2: 10 residues within 4Å:- Chain A: C.39, F.41, G.42, C.47, R.57
- Chain B: C.39, C.47, R.49, P.55
- Ligands: FES.7
2 PLIP interactions:2 interactions with chain A,- Metal complexes: A:C.39, A:C.47
FES.7: 10 residues within 4Å:- Chain A: C.39, C.47, R.49, P.55
- Chain B: C.39, F.41, G.42, C.47, R.57
- Ligands: FES.2
2 PLIP interactions:2 interactions with chain B,- Metal complexes: B:C.39, B:C.47
- 2 x WCC: FE(3)-NI(1)-S(4) CLUSTER(Non-covalent)
WCC.3: 14 residues within 4Å:- Chain A: H.261, C.294, C.295, S.312, C.333, G.445, C.446, G.475, C.476, C.526, M.560, H.561, K.563
- Ligands: FE2.4
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions,- Metal complexes: A:C.333, A:C.446, A:C.476, A:C.526, H2O.3, H2O.24
WCC.8: 14 residues within 4Å:- Chain B: H.261, C.294, C.295, S.312, C.333, G.445, C.446, G.475, C.476, C.526, M.560, H.561, K.563
- Ligands: FE2.9
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:C.333, B:C.446, B:C.476, B:C.526, H2O.35, H2O.56
- 2 x FE2: FE (II) ION(Non-covalent)
FE2.4: 4 residues within 4Å:- Chain A: H.261, C.295, C.526
- Ligands: WCC.3
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.261, A:C.295, H2O.3
FE2.9: 4 residues within 4Å:- Chain B: H.261, C.295, C.526
- Ligands: WCC.8
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.261, B:C.295, H2O.35
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 3 residues within 4Å:- Chain A: T.9, R.11, H.484
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:T.9
- Water bridges: A:R.11, A:R.11, A:R.11, A:R.11, A:R.11, A:H.484, A:H.484
- Salt bridges: A:R.11, A:H.484
SO4.10: 3 residues within 4Å:- Chain B: T.9, R.11, H.484
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:T.9
- Water bridges: B:R.11, B:R.11, B:R.11, B:R.11, B:R.11, B:H.484, B:H.484
- Salt bridges: B:R.11, B:H.484
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Basak, Y. et al., Substrate Activation at the Ni,Fe Cluster of CO Dehydrogenases: The Influence of the Protein Matrix. Acs Catalysis (2022)
- Release Date
- 2023-03-15
- Peptides
- Carbon monoxide dehydrogenase 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
XB
X
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x WCC: FE(3)-NI(1)-S(4) CLUSTER(Non-covalent)
- 2 x FE2: FE (II) ION(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Basak, Y. et al., Substrate Activation at the Ni,Fe Cluster of CO Dehydrogenases: The Influence of the Protein Matrix. Acs Catalysis (2022)
- Release Date
- 2023-03-15
- Peptides
- Carbon monoxide dehydrogenase 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
XB
X