SMTL ID : 7zyu.1

HDAC6 ZnF domain inhibitor - DARPin (Designed Ankyrin repeat protein) F10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.43 Å

Oligo State

hetero-1-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.8, P.9, H.10, C.78, Y.80, C.81 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.8, A:H.10, A:C.78, A:C.81 ZN.2: 6 residues within 4Å: Chain A: C.28, C.31, T.33, C.48, N.53, H.55 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.28, A:C.31, A:C.48, A:H.55 ZN.3: 6 residues within 4Å: Chain A: C.40, S.42, C.43, H.59, S.63, H.65 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.40, A:C.43, A:H.59, A:H.65

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 9 residues within 4Å: Chain A: E.36, W.38, G.49, S.70, I.72, Y.84 Chain B: K.102, F.104 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.70, A:Y.84 EDO.5: 7 residues within 4Å: Chain A: E.36, I.72 Chain B: F.104, W.112, K.137, L.142 Ligands: EDO.4 No protein-ligand interaction detected (PLIP) EDO.6: 2 residues within 4Å: Chain B: E.120, K.157 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, L. et al., Disrupting the HDAC6-ubiquitin interaction impairs infection by influenza and Zika virus and cellular stress pathways. Cell Rep (2022)

Release Date

2022-06-01

Peptides

Histone deacetylase 6: A
Designed Ankyrin repeat protein F10: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Histone deacetylase 6

Designed Ankyrin repeat protein F10