SMTL ID : 7zzk.1 (1 other biounit)

Structure of the N-acetyl-D-glucosamine oxidase from Ralstonia Solanacearum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x ALA: ALANINE(Covalent)

ALA.1: 3 residues within 4Å: Chain A: Q.488, R.507, P.508 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.507

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.2: 35 residues within 4Å: Chain A: F.19, V.59, R.60, S.61, G.62, G.63, H.64, C.65, Y.66, F.69, V.70, L.81, A.99, G.121, S.122, C.123, V.126, G.127, G.129, G.130, H.131, G.136, Y.137, G.187, G.188, G.191, I.192, I.193, S.337, Y.459, N.461, Y.462, H.502 Ligands: PEG.5, GOL.6 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:F.19, A:H.64, A:Y.66, A:V.126 Hydrogen bonds: A:S.61, A:S.61, A:G.62, A:G.63, A:H.64, A:C.65, A:S.122, A:G.127, A:G.127, A:G.130, A:H.131, A:Y.137, A:Y.137, A:G.188, A:I.193, A:I.193, A:Y.459, A:N.461, A:N.461, A:Y.462 Water bridges: A:V.59, A:F.69, A:C.123, A:C.123, A:G.187, A:G.187, A:G.187

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: L.425, R.426, G.429, R.433, D.466 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.433, A:R.433, A:D.466 Water bridges: A:G.429 GOL.4: 1 residues within 4Å: Chain A: R.394 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.394, A:R.394 GOL.6: 9 residues within 4Å: Chain A: G.121, S.122, Y.137, G.138, L.251, Q.381, D.383 Ligands: FAD.2, PEG.5 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.122, A:S.122, A:Y.137, A:Q.381, A:Y.462 Water bridges: A:G.120, A:L.139 GOL.7: 3 residues within 4Å: Chain A: D.149, W.150, R.394 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.149, A:R.394 Water bridges: A:D.149 GOL.8: 4 residues within 4Å: Chain A: K.241, W.246, G.387, N.390 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.387 Water bridges: A:G.387

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 9 residues within 4Å: Chain A: F.19, Y.66, Y.345, Q.410, Q.412, Y.414, Y.462 Ligands: FAD.2, GOL.6 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.66, A:Y.345, A:Y.345, A:Q.410, A:Y.462, A:Y.462 Water bridges: A:Y.137, A:Q.381 PEG.9: 6 residues within 4Å: Chain A: N.85, A.86, P.87, N.105, L.108, E.109 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boverio, A. et al., Structural Elucidation and Engineering of a Bacterial Carbohydrate Oxidase. Biochemistry (2023)

Release Date

2022-08-03

Peptides

N-acetyl-D-hexosamine oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-acetyl-D-hexosamine oxidase

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