SMTL ID : 8fv0.1

SpeG spermidine N-acetyltransferase from Staphylococcus aureus in complex with spermine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-12-mer

Ligands

12 x SPM: SPERMINE(Non-covalent)

SPM.1: 14 residues within 4Å: Chain A: H.48, L.49, L.50, D.51, E.52, E.54, R.55 Chain H: N.21, E.32, E.33, Y.35, E.36, E.40, L.44 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain A Hydrophobic interactions: H:Y.35 Hydrogen bonds: A:E.54 SPM.2: 16 residues within 4Å: Chain C: H.48, L.49, L.50, D.51, E.52, E.54, R.55, R.56 Chain D: N.21, E.32, E.33, Y.35, E.36, E.40, L.41, L.44 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:H.48 Hydrophobic interactions: D:Y.35 SPM.3: 16 residues within 4Å: Chain B: H.48, L.49, L.50, D.51, E.52, E.54, R.55, R.56 Chain C: N.21, E.32, E.33, Y.35, E.36, E.40, L.41, L.44 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:E.54 Hydrophobic interactions: C:Y.35 SPM.4: 14 residues within 4Å: Chain D: H.48, L.49, L.50, D.51, E.52, E.54, R.55 Chain K: N.21, E.32, E.33, Y.35, E.36, E.40, L.44 2 PLIP interactions: 1 interactions with chain K, 1 interactions with chain D Hydrophobic interactions: K:Y.35 Hydrogen bonds: D:E.54 SPM.5: 16 residues within 4Å: Chain A: N.21, E.32, E.33, Y.35, E.36, E.40, L.41, L.44 Chain F: H.48, L.49, L.50, D.51, E.52, E.54, R.55, R.56 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain F Hydrophobic interactions: A:Y.35 Hydrogen bonds: F:H.48 SPM.6: 16 residues within 4Å: Chain E: H.48, L.49, L.50, D.51, E.52, E.54, R.55, R.56 Chain F: N.21, E.32, E.33, Y.35, E.36, E.40, L.41, L.44 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain F Hydrogen bonds: E:E.54 Hydrophobic interactions: F:Y.35 SPM.7: 14 residues within 4Å: Chain B: N.21, E.32, E.33, Y.35, E.36, E.40, L.44 Chain G: H.48, L.49, L.50, D.51, E.52, E.54, R.55 2 PLIP interactions: 1 interactions with chain G, 1 interactions with chain B Hydrogen bonds: G:E.54 Hydrophobic interactions: B:Y.35 SPM.8: 16 residues within 4Å: Chain I: H.48, L.49, L.50, D.51, E.52, E.54, R.55, R.56 Chain J: N.21, E.32, E.33, Y.35, E.36, E.40, L.41, L.44 2 PLIP interactions: 1 interactions with chain J, 1 interactions with chain I Hydrophobic interactions: J:Y.35 Hydrogen bonds: I:H.48 SPM.9: 16 residues within 4Å: Chain H: H.48, L.49, L.50, D.51, E.52, E.54, R.55, R.56 Chain I: N.21, E.32, E.33, Y.35, E.36, E.40, L.41, L.44 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain I Hydrogen bonds: H:E.54 Hydrophobic interactions: I:Y.35 SPM.10: 14 residues within 4Å: Chain E: N.21, E.32, E.33, Y.35, E.36, E.40, L.44 Chain J: H.48, L.49, L.50, D.51, E.52, E.54, R.55 2 PLIP interactions: 1 interactions with chain J, 1 interactions with chain E Hydrogen bonds: J:E.54 Hydrophobic interactions: E:Y.35 SPM.11: 16 residues within 4Å: Chain G: N.21, E.32, E.33, Y.35, E.36, E.40, L.41, L.44 Chain L: H.48, L.49, L.50, D.51, E.52, E.54, R.55, R.56 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain G Hydrogen bonds: L:H.48 Hydrophobic interactions: G:Y.35 SPM.12: 16 residues within 4Å: Chain K: H.48, L.49, L.50, D.51, E.52, E.54, R.55, R.56 Chain L: N.21, E.32, E.33, Y.35, E.36, E.40, L.41, L.44 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain K Hydrophobic interactions: L:Y.35 Hydrogen bonds: K:E.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsimbalyuk, S. et al., SpeG spermidine N-acetyltransferase from Staphylococcus aureus in complex with spermine. To Be Published

Release Date

2023-04-26

Peptides

Diamine N-acetyltransferase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
B

C
A

D
C

E
B

F
A

G
C

H
B

I
A

J
C

K
B

L
A

Diamine N-acetyltransferase

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