SMTL ID : 8r76.1

Ficin C crystal form I

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.18 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: L.1, P.2 4 PLIP interactions: 4 interactions with chain A Water bridges: A:L.1, A:L.1, A:L.1, A:L.1 SO4.2: 3 residues within 4Å: Chain A: G.20, R.21, A.93 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.21 Water bridges: A:A.93, A:R.94, A:R.94, A:R.94 Salt bridges: A:R.21 SO4.3: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.125, A:K.125 SO4.7: 1 residues within 4Å: Chain A: Q.197 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.197

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.4: 6 residues within 4Å: Chain A: E.44, L.45, P.46, S.47, S.85, V.107 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.47 Water bridges: A:Q.86 Salt bridges: A:E.44 MES.5: 8 residues within 4Å: Chain A: D.55, C.56, A.57, T.58, S.59, N.62, K.95, C.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.58, A:K.95 Water bridges: A:N.62, A:N.62

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: I.16, N.18, W.184, G.185, T.186, N.187 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.18, A:T.186, A:N.187 Water bridges: A:N.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baldacci-Cresp, F. et al., Crystal structure of four variants of the protease Ficin from the common fig. To Be Published

Release Date

2024-12-04

Peptides

Ficin 1b: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ficin 1b