SMTL ID : 8a19.1

Structure of a leucinostatin derivative determined by host lattice display : L1E4V1 construct

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

hetero-1-1-mer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.264, N.266, D.268, A.270, D.275 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.264, A:D.268, A:A.270, A:D.275, H2O.4 MN.2: 3 residues within 4Å: Chain A: E.390, D.415, H.962 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.390, A:D.415, A:H.962, H2O.1, H2O.6, H2O.12 MN.3: 4 residues within 4Å: Chain A: G.771, N.798, A.799, D.911 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.771, A:A.799, A:D.911, H2O.1, H2O.10 MN.4: 5 residues within 4Å: Chain A: G.937, E.939, D.985, W.988, D.1105 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.937, A:E.939, A:D.985, A:W.988, H2O.14

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.5: 3 residues within 4Å: Chain A: D.808, T.839, T.849 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.839 Hydrogen bonds: A:D.808 MPD.6: 3 residues within 4Å: Chain A: Y.288, N.476, D.477 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.288, A:Y.288 Hydrogen bonds: A:Y.288, A:D.477 Water bridges: A:D.477, A:D.477 MPD.7: 3 residues within 4Å: Chain A: K.696, D.742, A.743 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.743 Hydrogen bonds: A:A.743 MPD.8: 5 residues within 4Å: Chain A: Q.356, R.357, N.918, N.940, N.941 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Q.356, A:R.357 Hydrogen bonds: A:R.357, A:N.918 Water bridges: A:R.357, A:E.939, A:N.940

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.9: 6 residues within 4Å: Chain A: Y.920, N.936, G.937, F.938, E.939, N.940 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.937, A:G.937, A:E.939, A:N.940

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.11: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain A: S.635 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain A: Y.883, F.885, N.940, A.942 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain A: R.831, K.854 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kiss, C. et al., Structure of a hydrophobic leucinostatin derivative determined by host lattice display. Acta Crystallogr D Struct Biol (2022)

Release Date

2022-12-07

Peptides

L1E4v1: A
6-(2-methoxyethoxy)-11,15-dimethyl-8-oxa-2,11,15,19,21,23-hexazatetracyclo[15.6.1.13,7.020,24]pentacosa-1(23),3(25),4,6,17,20(24),21-heptaen-10-one: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

L1E4v1

6-(2-methoxyethoxy)-11,15-dimethyl-8-oxa-2,11,15,19,21,23-hexazatetracyclo[15.6.1.13,7.020,24]pentacosa-1(23),3(25),4,6,17,20(24),21-heptaen-10-one

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