SMTL ID : 8a25.1

Lysophospholipase PlaA from Legionella pneumophila str. Corby - complex with PEG fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

2 x MLA: MALONIC ACID(Non-covalent)

MLA.1: 3 residues within 4Å: Chain A: R.109, N.112, L.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.112 Salt bridges: A:R.109 MLA.2: 7 residues within 4Å: Chain A: N.28, V.30, L.85, Y.114, H.118, S.123, S.126 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.85 Hydrogen bonds: A:N.28, A:Y.114, A:S.123 Salt bridges: A:H.118, A:H.118

1 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)

BU3.3: 9 residues within 4Å: Chain A: P.176, D.177, T.194, S.197, A.198, N.201, G.226, S.227, D.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.201 Water bridges: A:N.174, A:A.198

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 17 residues within 4Å: Chain A: L.36, W.131, L.138, P.176, L.178, T.181, T.225, F.229, V.232, F.282, V.286, H.287, P.288, A.292, I.295, M.296, K.299 No protein-ligand interaction detected (PLIP)

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.5: 6 residues within 4Å: Chain A: V.94, S.95, T.106, L.107, R.108, G.154 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hiller, M. et al., Structure-function relationships underpin disulfide loop cleavage-dependent activation of Legionella pneumophila lysophospholipase A PlaA. Mol.Microbiol. (2024)

Release Date

2023-06-14

Peptides

Lysophospholipase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysophospholipase A

Related Entries With Identical Sequence