SMTL ID : 8a2p.1

Room-temperature structure of the stabilised A2A-LUAA47070 complex determined by synchrotron serial crystallography

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

monomer

Ligands

1 x 9Y2: 4-(3,3-dimethylbutanoylamino)-3,5-bis(fluoranyl)-~{N}-(1,3-thiazol-2-yl)benzamide(Non-covalent)

9Y2.1: 15 residues within 4Å: Chain A: A.64, I.67, S.68, V.85, L.86, L.168, F.169, M.178, W.343, L.346, H.347, N.350, M.367, Y.368, I.371 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.67, A:F.169, A:F.169, A:Y.368 Hydrogen bonds: A:F.169, A:N.350 pi-Stacking: A:H.347 Halogen bonds: A:A.64

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 5 residues within 4Å: Chain A: L.59, A.73, A.74, G.77, I.81 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.59, A:I.81 Hydrogen bonds: A:A.74 CLR.3: 5 residues within 4Å: Chain A: L.188, C.351, F.352, C.356 Ligands: OLA.8 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.188, A:F.352, A:F.352 CLR.4: 7 residues within 4Å: Chain A: P.345, I.348, F.352, C.359, S.360, A.362, L.366 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.345, A:I.348, A:F.352, A:F.352, A:A.362, A:L.366

4 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.5: 3 residues within 4Å: Chain A: L.15, I.22, T.66 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.15, A:I.22, A:T.66 OLA.6: 6 residues within 4Å: Chain A: G.6, V.9, V.13, Y.368, L.369 Ligands: OLA.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.9, A:V.13, A:L.369 OLA.7: 1 residues within 4Å: Ligands: OLA.6 No protein-ligand interaction detected (PLIP) OLA.8: 7 residues within 4Å: Chain A: L.191, L.195, A.333, A.336, G.337, A.340 Ligands: CLR.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.195, A:A.340

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 3 residues within 4Å: Chain A: D.53, S.92, N.377 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.92, A:S.92, A:N.377 Water bridges: A:S.378

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Birch, J. et al., A versatile approach to high-density microcrystals in lipidic cubic phase for room-temperature serial crystallography. J.Appl.Crystallogr. (2023)

Release Date

2023-08-30

Peptides

Adenosine receptor A2a,Soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Adenosine receptor A2a,Soluble cytochrome b562

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