SMTL ID : 8a49.1

Endoglycosidase S in complex with IgG1 Fc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.45 Å

Oligo State

hetero-2-2-mer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.1: 37 residues within 4Å: Chain A: Y.76, N.77, S.78 Chain B: R.21, W.23, H.24, K.35, F.52, H.53, D.54, W.55, R.83, T.84, P.86, R.88, F.89, N.95, A.135, L.137, D.139, S.140, D.181, T.183, Q.205, V.206, Y.207, Q.210, G.211, R.230, E.251, E.252, N.253, A.254, G.257, N.258, W.260, Y.304 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.54, B:W.55, B:Y.304, B:Y.304, B:Q.205, B:Y.207, B:Q.210, B:R.88, B:R.88, B:D.139, B:S.140, B:H.53, B:H.53, B:R.83, B:R.88 Hydrophobic interactions: B:F.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sudol, A.S.L. et al., Extensive substrate recognition by the streptococcal antibody-degrading enzymes IdeS and EndoS. Nat Commun (2022)

Release Date

2022-11-30

Peptides

IgG1 Fc: AD
Secreted endoglycosidase EndoS: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

B
C

C
D

IgG1 Fc

Secreted endoglycosidase EndoS