SMTL ID : 8a4a.1

Structure of human Rep15 in complex with bovine Rab3C.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 25 residues within 4Å: Chain B: N.40, S.41, S.42, V.43, G.44, K.45, T.46, S.47, F.57, T.58, S.59, F.61, S.63, T.64, A.89, G.90, Q.91, N.145, K.146, D.148, M.149, S.175, A.176, K.177 Ligands: MG.2 28 PLIP interactions: 28 interactions with chain B Hydrogen bonds: B:S.41, B:S.42, B:V.43, B:G.44, B:K.45, B:K.45, B:T.46, B:T.46, B:S.47, B:S.47, B:T.58, B:T.64, B:G.90, B:N.145, B:K.146, B:K.146, B:S.175, B:A.176, B:K.177 Water bridges: B:T.46, B:V.62, B:T.64, B:T.64, B:Q.91, B:Q.91 Salt bridges: B:D.148 pi-Stacking: B:F.57, B:F.57

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain B: T.46, T.64, D.87 Ligands: GNP.1 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:T.46, B:T.64, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rai, A. et al., Rep15 interacts with several Rab GTPases and has a distinct fold for a Rab effector. Nat Commun (2022)

Release Date

2022-08-10

Peptides

Rab15 effector protein: A
Ras-related protein Rab-3C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Rab15 effector protein

Ras-related protein Rab-3C

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