SMTL ID : 8a58.1

X-ray structure of TRIM21 RING E3 ligase in complex with E2 enzyme Ube2W

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-2-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.16, C.19, C.36, C.39 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.16, B:C.19, B:C.36, B:C.39 ZN.2: 4 residues within 4Å: Chain B: C.31, H.33, C.51, C.54 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.31, B:H.33, B:C.51, B:C.54 ZN.3: 5 residues within 4Å: Chain C: C.31, H.33, C.51, V.53, C.54 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.31, C:H.33, C:C.51, C:C.54 ZN.4: 4 residues within 4Å: Chain C: C.16, C.19, C.36, C.39 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.16, C:C.19, C:C.36, C:C.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kiss, L. et al., Trim-Away ubiquitinates and degrades lysine-less and N-terminally acetylated substrates. Nat Commun (2023)

Release Date

2023-04-26

Peptides

Ubiquitin-conjugating enzyme E2 W: AD
E3 ubiquitin-protein ligase TRIM21: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

B
C

C
D

Ubiquitin-conjugating enzyme E2 W

E3 ubiquitin-protein ligase TRIM21

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