SMTL ID : 8a5f.1

Crystal structure of Deinococcus radiodurans Endonuclease III-1 R61Q variant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: I.104, K.105, A.107, P.108, G.109, G.110 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:I.104, A:A.107, A:G.109, A:G.110, H2O.1 MG.2: 3 residues within 4Å: Chain A: T.129, L.131, V.134 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.129, A:L.131, A:V.134, H2O.4, H2O.6

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.3: 10 residues within 4Å: Chain A: R.164, V.165, V.205, C.206, P.211, C.213, C.216, R.219, C.222, Y.225 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.206, A:C.213, A:C.216, A:C.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rollo, F. et al., Disentangling Unusual Catalytic Properties and the Role of the [4Fe-4S] Cluster of Three Endonuclease III from the Extremophile D. radiodurans. Molecules (2022)

Release Date

2022-08-03

Peptides

Endonuclease III: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endonuclease III