SMTL ID : 8a5m.1 (1 other biounit)

TRIM7 PRYSPRY in complex with a MNV1-NS6 peptide LEALEFQ

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.92 Å

Oligo State

monomer

Ligands

1 x GLU- ALA- LEU- GLU- PHE- GLN: MNV1-NS6 peptide LEALEFQ(Non-covalent)

GLU-ALA-LEU-GLU-PHE-GLN.1: 15 residues within 4Å: Chain A: R.22, T.50, N.51, T.52, R.53, G.76, W.77, A.78, L.91, F.94, Q.104, N.106, S.167, C.169, S.170 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:T.52, A:F.94 Hydrogen bonds: A:T.52, A:A.78, A:Q.104, A:S.167, A:S.167 Salt bridges: A:R.53 pi-Cation interactions: A:R.22

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: G.72, S.73, K.74, G.172, T.173, Y.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.73, A:K.74, A:T.173 PO4.3: 4 residues within 4Å: Chain A: E.70, Y.174, R.176, W.178 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.174 Salt bridges: A:R.176

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luptak, J. et al., TRIM7 Restricts Coxsackievirus and Norovirus Infection by Detecting the C-Terminal Glutamine Generated by 3C Protease Processing. Viruses (2022)

Release Date

2022-07-06

Peptides

E3 ubiquitin-protein ligase TRIM7: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin-protein ligase TRIM7

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