SMTL ID : 8a7i.2 (1 other biounit)

Crystal structure of BRD9 bromodomain in complex with compound EA-89

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x L8L: ~{N}-[1,1-bis(oxidanylidene)thian-4-yl]-7-[3-methyl-1-(piperidin-4-ylmethyl)indol-5-yl]-4-oxidanylidene-5-propyl-thieno[3,2-c]pyridine-2-carboxamide(Non-covalent)

L8L.1: 12 residues within 4Å: Chain A: H.31, F.33, F.34, F.36, V.38, I.42, A.85, Y.88, N.89, R.90, T.93, Y.95 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.33, A:F.33, A:F.33, A:F.34, A:F.34, A:F.36, A:I.42, A:A.85, A:Y.95, A:Y.95 Hydrogen bonds: A:N.89, A:N.89 pi-Stacking: A:F.36, A:Y.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weisberg, E. et al., BRD9 degraders as chemosensitizers in acute leukemia and multiple myeloma. Blood Cancer J (2022)

Release Date

2022-08-10

Peptides

Bromodomain-containing protein 9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bromodomain-containing protein 9

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