SMTL ID : 8a7n.1

Crystal Structure of human Brachyury G177D variant in complex with (S)-N-(3-aminopropyl)-3-((1-(2-fluorophenyl)-2-oxopyrrolidin-3-yl)amino)-N-methylbenzamide (CF-2-125)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 1 residues within 4Å: Chain A: K.64 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.64

1 x L9E: N-(3-azanylpropyl)-3-[[(3S)-1-(2-fluorophenyl)-2-oxidanylidene-pyrrolidin-3-yl]amino]-N-methyl-benzamide(Non-covalent)

L9E.2: 8 residues within 4Å: Chain A: G.42, L.43, D.44, Y.49, I.133, R.135, M.142, T.144 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.43, A:D.44, A:I.133, A:R.135, A:T.144 Hydrogen bonds: A:G.42, A:D.44, A:D.44, A:R.135, A:R.135 pi-Stacking: A:Y.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Newman, J.A. et al., Structural insights into human brachyury DNA recognition and discovery of progressible binders for cancer therapy. Nat Commun (2025)

Release Date

2022-10-05

Peptides

T-box transcription factor T: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

T-box transcription factor T

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